PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.007G179500.1
Common NamePHAVU_007G179500g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB_related
Protein Properties Length: 1113aa    MW: 124779 Da    PI: 9.1979
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.007G179500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.12.1e-084682341
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41
                         W++eE e +++a +++G++ Wk++a  +  +Rt +++ 
  Phvul.007G179500.1 46 QWSKEELEGFYEAYRMYGKD-WKKVAGVVR-NRTTEMVE 82
                        6*****************99.*********.***99875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.64E-104190IPR009057Homeodomain-like
PROSITE profilePS512939.7584295IPR017884SANT domain
SMARTSM007170.00234391IPR001005SANT/Myb domain
PfamPF002493.7E-74686IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-44683IPR009057Homeodomain-like
CDDcd001678.68E-54781No hitNo description
PfamPF065843.1E-30627727IPR033471DIRP domain
SMARTSM011352.6E-52627728IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1113 aa     Download sequence    Send to blast
MAPTRKSRSV SKRISNSSDV SPEKDGVNSN KNKHRKKKLT DKLGSQWSKE ELEGFYEAYR  60
MYGKDWKKVA GVVRNRTTEM VEALYNMNRA YLSLPEGTAS VVGLIAMMTD HYNVLEESDS  120
ERESSDALGP RKFIKRKREK VQLSVSKDQS HSIASSEGCL SLLKKRRLDG IVPHAVGKRT  180
PRVPVSYSYK KDYTENYVSP YRRSLKSTTD ANDDEVAHVV ALALTEAAQR GGSPQVSQSP  240
RRRVEQKPSP VQRWEKKHQV SETTRAKLHN LSVDEELLDG SIESRGADNR EYARDNSSLM  300
DMEGTGTVEV LQKGGKFYRK RERVKNVGNH QLDDGGEACS GTEEGLCFSS LKEMVDSEVT  360
NEKLEKISPK GGGKRNKKLF FGDETPALNA LQTLADLSLM MPISTIDSES SIQLKGDRIS  420
ADKDSKSALP EATSTSHKRH KLKRSVVPEI EVSTSKKSKL GKESAKDTNV LSESKEQLPF  480
VDATWKRKRK SMVPKVANAK LDTFPSGPLK DEALDDEKKP VAKGKHGDQV FILPKQLKTV  540
KSSESSLFSD QKDLTASMAE TPLLNEVSLP TKRSRRKMNL PRTSFAKEKS SDYILKSQPN  600
KHSAVKEKLS SCLSSDIVRR WFIFEWFYSA IDYPWFAKRE LMEYLNHVGL GNIPRLTRVE  660
WSVVRGSLGK PRRLSEHFLH DERQKLAEYR ESVRKHYAEL RTGIRDGLPT DLARPLCVGQ  720
RVIAVHPKTR EIHDGSVLTV DYDKCRIQFD RPELGVEFVM DIDCMPFNPL DNMPEALRHI  780
DDRKGSPIEP HVNGTSNFGG CENHSSPVKA MVATVDNFCA QAGCVQPCKV THHQAKEADI  840
HALSELKRAL DRKETLLMEL RSSNSDILEN QNGIECVNDS EVFKKHYAMV SDAMLQLRQR  900
NTYRGNSLPP WMKPQTSFNV HDDLPNMLDS SLTQELGSTV VQIIKGSRSR SHAMVDAAFK  960
ALSLTKEGED AFVKIGQALD SINHQQLASK SRLPLVRSQE QVTANGSFYN HNHSTCSVSE  1020
SILNDPSGAK LHNYSDKFDT ELPSDLITSC VATLIMIQTC TERQYPPADV AQILDSAVSS  1080
LHPCCPQNLP IYREIQMCMG RIKTQILALI PT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1570577TKRSRRKM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-149AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007144725.10.0hypothetical protein PHAVU_007G179500g
TrEMBLV7BFR90.0V7BFR9_PHAVU; Uncharacterized protein
STRINGGLYMA10G29481.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17833369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding